Package: rmutil 1.1.10

rmutil: Utilities for Nonlinear Regression and Repeated Measurements Models

A toolkit of functions for nonlinear regression and repeated measurements not to be used by itself but called by other Lindsey packages such as 'gnlm', 'stable', 'growth', 'repeated', and 'event' (available at <https://www.commanster.eu/rcode.html>).

Authors:Bruce Swihart [cre, aut], Jim Lindsey [aut], K. Sikorski [ctb, cph], F. Stenger [ctb, cph], J. Schwing [ctb, cph]

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# Install 'rmutil' in R:
install.packages('rmutil', repos = c('https://swihart.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/swihart/rmutil/issues

On CRAN:

fortran

8.33 score 1 stars 72 packages 394 scripts 13k downloads 4 mentions 208 exports 0 dependencies

Last updated 2 years agofrom:f803cff306. Checks:OK: 9. Indexed: yes.

TargetResultDate
Doc / VignettesOKDec 06 2024
R-4.5-win-x86_64OKDec 06 2024
R-4.5-linux-x86_64OKDec 06 2024
R-4.4-win-x86_64OKDec 06 2024
R-4.4-mac-x86_64OKDec 06 2024
R-4.4-mac-aarch64OKDec 06 2024
R-4.3-win-x86_64OKDec 06 2024
R-4.3-mac-x86_64OKDec 06 2024
R-4.3-mac-aarch64OKDec 06 2024

Exports:as.data.frameas.data.frame.repeatedas.data.frame.responseas.data.frame.tccovas.data.frame.tvcovas.matrix.repeatedas.matrix.responseas.matrix.tccovas.matrix.tvcovcapplycoef.gnlmcontr.meancovariatescovariates.formulafncovariates.repeatedcovariates.tccovcovariates.tvcovcovindcovind.defaultdbetabinomdboxcoxdburrdconsulddoublebinomddoublepoisdeltadelta.repeateddelta.responsedescriptiondescription.defaultdescription.repeateddeviance.gnlmdf.residual.gnlmdftorepdgammacountdgextvaldggammadginvgaussdglogisdgweibulldhjorthdinvgaussdlaplacedlevydmultbinomdmultpoisdparetodpowexpdpvfpoisdsimplexdskewlaplacedtwosidedpowerfinterpfinterp.data.framefinterp.defaultfinterp.repeatedfinterp.tccovfinterp.tvcovfmobjfnenvirfnenvir.data.framefnenvir.defaultfnenvir.repeatedfnenvir.tccovfnenvir.tvcovformula.formulafnformula.repeatedformula.tccovgauss.hermitegettvcintint2iprofileiprofile.defaultlin.diff.eqnlvnamexpmodelmodel.formulafnmprofilemprofile.defaultnames.repeatednames.responsenames.tccovnames.tvcovnestingnesting.repeatednesting.responsenobsnobs.data.framenobs.defaultnobs.responsenobs.tvcovparametersparameters.formulafnpbetabinompboxcoxpburrpconsulpdoublebinompdoublepoispgammacountpgextvalpggammapginvgausspglogispgweibullphjorthpinvgaussplaplaceplevyplot.iprofileplot.mprofileplot.repeatedplot.residualsplot.responsepmultbinompmultpoispparetoppowexpppvfpoisprint.fmobjprint.formulafnprint.gnlmprint.repeatedprint.responseprint.tccovprint.tvcovpsimplexpskewlaplaceptwosidedpowerqbetabinomqboxcoxqburrqconsulqdoublebinomqdoublepoisqgammacountqgextvalqggammaqginvgaussqglogisqgweibullqhjorthqinvgaussqlaplaceqlevyqmultbinomqmultpoisqparetoqpowexpqpvfpoisqsimplexqskewlaplaceqtwosidedpowerrbetabinomrboxcoxrburrrconsulrdoublebinomrdoublepoisread.listread.repread.survresponseresponse.repeatedresponse.responseresptyperesptype.repeatedresptype.responserestovecrgammacountrgextvalrggammarginvgaussrglogisrgweibullrhjorthrinvgaussrlaplacerlevyrmnarmultbinomrmultpoisrparetorpowexprpvfpoisrsimplexrskewlaplacertwosidedpowerrunge.kuttatcctomattimestimes.defaulttimes.responsetransform.repeatedtransform.responsetransform.tccovtransform.tvcovtvctomatunitsunits.defaultunits.repeatedvcov.gnlmweights.gnlmweights.repeatedweights.responsewr

Dependencies:

Readme and manuals

Help Manual

Help pageTopics
Beta Binomial Distributiondbetabinom pbetabinom qbetabinom rbetabinom
Box-Cox Distributiondboxcox pboxcox qboxcox rboxcox
Burr Distributiondburr pburr qburr rburr
A Fast Simplified Version of 'tapply'capply
Consul Distributiondconsul pconsul qconsul rconsul
Contrast Matrix for Constraints about the Meancontr.mean
Methods for response, tccov, tvcov, and repeated Data Objectsas.data.frame as.data.frame.repeated as.data.frame.response as.data.frame.tccov as.data.frame.tvcov as.matrix as.matrix.repeated as.matrix.response as.matrix.tccov as.matrix.tvcov coef.gnlm covariates covariates.repeated covariates.tccov covariates.tvcov covind covind.default DataMethods delta delta.repeated delta.response description description.default description.repeated deviance.gnlm df.residual.gnlm formula formula.repeated formula.tccov names names.repeated names.response names.tccov names.tvcov nesting nesting.repeated nesting.response nobs nobs.data.frame nobs.default nobs.response nobs.tvcov plot.repeated plot.response print.fmobj print.gnlm print.repeated print.response print.tccov print.tvcov response response.repeated response.response resptype resptype.repeated resptype.response times times.default times.response transform transform.repeated transform.response transform.tccov transform.tvcov units units.default units.repeated vcov.gnlm weights weights.gnlm weights.repeated weights.response
Transform a Dataframe to a repeated Objectdftorep
Double Binomial Distributionddoublebinom pdoublebinom qdoublebinom rdoublebinom
Double Poisson Distributionddoublepois pdoublepois qdoublepois rdoublepois
Formula Interpreterfinterp finterp.data.frame finterp.default finterp.repeated finterp.tccov finterp.tvcov
Object Finderfmobj
Check Covariates and Parameters of a Functionfnenvir fnenvir.data.frame fnenvir.default fnenvir.repeated fnenvir.tccov fnenvir.tvcov
Methods for formulafn Functionscovariates.formulafn formula.formulafn model model.formulafn parameters parameters.formulafn print.formulafn
Gamma Count Distributiondgammacount pgammacount qgammacount rgammacount
Calculate Gauss-Hermite Quadrature Pointsgauss.hermite
Generalized Extreme Value Distributiondgextval pgextval qgextval rgextval
Generalized Gamma Distributiondggamma pggamma qggamma rggamma
Generalized Inverse Gaussian Distributiondginvgauss pginvgauss qginvgauss rginvgauss
Generalized Logistic Distributiondglogis pglogis qglogis rglogis
Generalized Weibull Distributiondgweibull pgweibull qgweibull rgweibull
Find the Most Recent Value of a Time-varying Covariate Before Each Observed Responsegettvc
Hjorth Distributiondhjorth phjorth qhjorth rhjorth
Vectorized Numerical Integrationint
Vectorized Two-dimensional Numerical Integrationint2
Inverse Gaussian Distributiondinvgauss pinvgauss qinvgauss rinvgauss
Produce Individual Time Profiles for Plottingiprofile iprofile.default plot.iprofile
Laplace Distributiondlaplace plaplace qlaplace rlaplace
Levy Distributiondlevy plevy qlevy rlevy
Solution of Autonomous Linear Differential Equationslin.diff.eqn
Create a repeated Object, Leaving NAslvna
Matrix Exponentiationmexp
Power of a Matrix%^%
Produce Marginal Time Profiles for Plottingmprofile mprofile.default plot.mprofile
Multiplicative Binomial Distributiondmultbinom pmultbinom qmultbinom rmultbinom
Multiplicative Poisson Distributiondmultpois pmultpois qmultpois rmultpois
Pareto Distributiondpareto ppareto qpareto rpareto
Pharmacokinetic Compartment Modelsmu1.0o1c mu1.1o1c mu1.1o2c mu1.1o2cc mu1.1o2cl mu2.0o1c mu2.0o1cfp mu2.0o2c1 mu2.0o2c1fp mu2.0o2c2 mu2.0o2c2fp mu2.1o1c mu2.1o1cfp pkpd
Plot Residualsplot.residuals
Power Exponential Distributiondpowexp ppowexp qpowexp rpowexp
Power Variance Function Poisson Distributiondpvfpois ppvfpois qpvfpois rpvfpois
Read a List of Matrices from a File for Unbalanced Repeated Measurementsread.list
Read a Rectangular Data Set from a File to Create a repeated Objectread.rep
Read a List of Matrices from a File for Repeated Times to Eventsread.surv
Create a response Objectrestovec
Create a repeated Object, Removing NAsrmna
Utilities for Repeated Measurements Libraryrmutil
Runge-Kutta Method for Solving Differential Equationsrunge.kutta
Simplex Distributiondsimplex psimplex qsimplex rsimplex
Skew Laplace Distributiondskewlaplace pskewlaplace qskewlaplace rskewlaplace
Create a Time-constant, Inter-individual Covariate (tccov) Objecttcctomat
Create a Time-varying, Intra-individual Covariate (tvcov) Objecttvctomat
Two-Sided Power Distributiondtwosidedpower ptwosidedpower qtwosidedpower rtwosidedpower
Find the Response Vector and Design Matrix for a W&R Model Formulawr